Table 1 Average percentage difference between average density curves (Fig. 2) in the three zones surrounding TSSs of “constant genes” (Fig. 1E)
Zone 1 (%) | Zone 2 (%) | Zone 3 (%) | |
|---|---|---|---|
Before normalization | 27.5 | 34.75 | 28.25 |
Quantile Normalization by CHIPIN | 15.3 | 1.8 | 7.9 |
Linear Regression by CHIPIN | 21 | 4.5 | 19.2 |
Same number of reads | 7.5 | 23 | 6.5 |
LILY | 6.5 | 18 | 6.7 |
ChIPseqSpikeInFree | 29 | 27 | 29.5 |