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Table 1 Average percentage difference between average density curves (Fig. 2) in the three zones surrounding TSSs of “constant genes” (Fig. 1E)

From: CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes

  Zone 1 (%) Zone 2 (%) Zone 3 (%)
Before normalization 27.5 34.75 28.25
Quantile Normalization by CHIPIN 15.3 1.8 7.9
Linear Regression by CHIPIN 21 4.5 19.2
Same number of reads 7.5 23 6.5
LILY 6.5 18 6.7
ChIPseqSpikeInFree 29 27 29.5
  1. The smallest value for each zone is shown in bold