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Table 4 The intersection of the first 10 pathways (sorted by the relevance of p value \(\le 0.005\)) obtained from pathDIP by performing PEA using CC genes lists and the KEGG database

From: Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data

Pathway Name

p value

FDRc

Bc

(1) Pathways in cancer

1.93 × 10\(^{-50}\)

6.16 × 10\(^{-48}\)

6.16 × 10\(^{-48}\)

(2) Human papillomavirus infection

6.34 × 10\(^{-32}\)

1.01 × 10\(^{-29}\)

2.03 × 10\(^{-29}\)

(3) Endocytosis

4.28 × 10\(^{-28}\)

4.56 × 10\(^{-26}\)

1.37 × 10\(^{-25}\)

(4) Lysosome

8.40 × 10\(^{-28}\)

6.72 × 10\(^{-26}\)

2.69 × 10\(^{-25}\)

(5) MicroRNAs in cancer

8.88 × 10\(^{-25}\)

5.68 × 10\(^{-23}\)

2.84 × 10\(^{-22}\)

(6) Human T-cell leukemia virus 1 infection

1.42 × 10\(^{-24}\)

7.59 × 10\(^{-23}\)

4.56 × 10\(^{-22}\)

(7) MAPK signaling

1.94 × 10\(^{-24}\)

8.88 × 10\(^{-23}\)

6.22 × 10\(^{-22}\)

(8) PI3K-Akt signaling

5.31 × 10\(^{-22}\)

1.54 × 10\(^{-20}\)

1.70 × 10\(^{-19}\)

(9) Cell cycle

1.47 × 10\(^{-21}\)

3.92 × 10\(^{-20}\)

4.70 × 10\(^{-19}\)

(10) Autophagy-animal

1.92 × 10\(^{-19}\)

3.07 × 10\(^{-18}\)

6.13 × 10\(^{-17}\)

  1. In the table FDRc represents the corrected p value using FDR corrector, and Bc refers to the corrected p value by using Bonferroni corrector