From: Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data
Tool | CC | EC | TC | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
TCGA | GEO | TCGA | GEO | TCGA | GEO | |||||||
NP | NP | U | I | NP | NP | U | I | NP | NP | U | I | |
BiP | 274 | 53 | 274 | 53 | 276 | 252 | 295 | 233 | 280 | 54 | 284 | 50 |
CePa | 23 | 25 | 27 | 21 | 23 | 25 | 27 | 21 | 23 | 25 | 28 | 20 |
pathDIP | 52 | 290 | 291 | 51 | 133 | 60 | 152 | 41 | 71 | 233 | 226 | 68 |
SPIA | 4 | 1 | 5 | 0 | 1 | 6 | 7 | 0 | 0 | 19 | 19 | 0 |