Skip to main content

Table 6 Metrics on the cell line dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

 

Seurat

Harmony

SSBER

LIGER

iLISI

1.369536

1.48654

1.56786

1.46342

cLISI

1.005186

1.0045738

1.000456

1.00428

ARI

0.7753852

0.885436

0.993591

0.86463

ASW_batch

0.167

0.146

0.086

0.186

ASW_celltype

0.447

0.668

0.783

0.658

Isolated label

0.729

0.858

0.925

0.837

Cell cycle

0.618

0.707

0.662

0.609

HVG

0.726

 

0.784

 
  1. Bold represents the best indicator among four algorithms
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us