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Table 5 Metrics on the mouse retina dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

 

Seurat

Harmony

SSBER

LIGER

iLISI

1.166076

1.200744

1.146624

1.17424

cLISI

1.054624

1.36209

1.044166

1.2365

ARI

0.6525991

0.53935

0.850938

0.54793

ASW_batch

0.142

0.145

0.148

0.184

ASW_celltype

0.673

0.684

0.765

0.703

Isolated label

0.592

0.647

0.783

0.618

Cell cycle

0.521

0.587

0.556

0.538

HVG

0.529

 

0.582

 
  1. Bold represents the best indicator among four algorithms
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BMC Bioinformatics

ISSN: 1471-2105

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