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Table 21 Exact match results for the concept normalization experiments on the core evaluation annotation set of 30 held-out documents (class ID level)

From: Concept recognition as a machine translation problem

Ontology

Token-ids (%)

Type-ids (%)

Shuffled-ids (%)

Random-ids (%)

Alphabetical-ids (%)

ChEBI

82*

65

0

0

78

CL

72*

72*

69

70

56

GO_BP

82*

79

64

27

52

GO_CC

81

80

81

84*

76

GO_MF

98*

98*

98*

98*

51

MOP

95

97*

97*

92

80

NCBITaxon

87*

0

0

0

0

PR

10*

3

0

0

8

SO

97*

96

97*

97*

96

UBERON

78*

74

0

0

74

  1. We report the exact match percentage at the class ID level. The highest percentage is bolded and with an asterisk*
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BMC Bioinformatics

ISSN: 1471-2105

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