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Table 3 Classification of gene models into different groups based on their relative location to other genes, number of isoforms and other criteria

From: FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

 

Name

Description

Group 1

Uni-exon transcripts

Transcripts having a single exon and no introns

Group 2

Transcripts without UTRs

Transcripts missing either the 5′ or the 3′ UTR sequence

Group 3

Transcripts with UTRs

Transcripts having both UTRs

Group 4

Transcripts with micro-exons

Transcripts where at least one exon has length less than 50 nucleotides

Group 5

Transcripts with long introns

Transcripts where at least one intron has a length greater than 10,000 bp

Group 6

Closely placed transcripts on same strand

Transcripts on the same strand having less than 250 nucleotides between each other

Group 7

Closely placed transcripts on opposite strand

Transcripts on the opposite strands having less than 250 nucleotides between each other

Group 8

Multi transcript gene

Transcripts of a gene that have multiple transcripts

Group 9

Single transcript gene

Transcripts of a gene that have single transcript