Table 1 Testing dataset (* denotes proteins with a predominant β fold and a short helix)
From: Decoy selection for protein structure prediction via extreme gradient boosting and ranking
Difficulty | # | PDB ID | Fold | Length | |Ω| | min_dist |
|---|---|---|---|---|---|---|
(Ã…) | ||||||
Easy | 1 | 1dtdb | α+β | 61 | 58,745 | 0.51 |
2 | 1wapa | β | 68 | 68,000 | 0.68 | |
3 | 1hz6a | α+β | 64 | 60,000 | 0.69 | |
4 | 1tig | α+β | 88 | 60,000 | 0.70 | |
5 | 1dtja | α+β | 74 | 60,500 | 0.74 | |
Medium | 6 | 1bq9 | β | 53 | 61,000 | 0.98 |
7 | 1ail | α | 70 | 58,491 | 1.01 | |
8 | 1c8ca | β∗ | 64 | 65,000 | 1.04 | |
9 | 2ci2 | α+β | 65 | 60,000 | 1.19 | |
10 | 1fwp | α+β | 69 | 51,724 | 1.63 | |
12 | 1sap | β | 66 | 66,000 | 1.93 | |
Hard | 11 | 1hhp | β∗ | 99 | 60,000 | 1.85 |
13 | 2ezk | α | 93 | 54,626 | 2.89 | |
14 | 1aoy | α | 78 | 57,000 | 3.03 | |
15 | 2h5nd | α | 123 | 54,795 | 3.46 | |
16 | 1isua | coil | 62 | 60,000 | 3.67 | |
17 | 1cc5 | α | 83 | 55,000 | 4.31 | |
18 | 1aly | β | 146 | 53,000 | 9.38 |