From: A big data approach to metagenomics for all-food-sequencing
Data set | AFS-MetaCache | CLARK | Kraken2 | Kraken2+Bracken | |
---|---|---|---|---|---|
AFS20 | Build time | 1h 11m | 15h 37m | 1h 27m | 5h 32m |
Build memory | 64 GB | 428 GB | 69 GB | 147 GB | |
Query time | 136 s | 93 s | 37 s | 111 s | |
Query speed | 11.5 MR/m | 16.9 MR/m | 43.2 MR/m | 14.2 MR/m | |
Query memory | 50 GB | 152 GB | 54 GB | 54 GB | |
AFS31 | Build time | 1h 47m | - | 3h 19min | 11h 41min |
Build memory | 91 GB | - | 107 GB | 296 GB | |
Query time | 175 s | - | 44 s | 58 s | |
Query speed | 8.9 MR/m | - | 35.9 MR/m | 27.0 MR/m | |
Query memory | 78 GB | - | 72 GB | 72 GB | |
AFS20RS90 | Build time | 1h 42m | - | 2h 58m | 8h 53m |
Build memory | 110 GB | - | 94 GB | 168 GB | |
Query time | 180 s | - | 43 s | 117 s | |
Query speed | 8.7 MR/m | - | 37.0 MR/m | 13.5 MR/m | |
Query memory | 94 GB | - | 79 GB | 79 GB | |
AFS31RS90 | Build time | 3h 10m | - | 5h 55min | 17h 44min |
Build memory | 135 GB | - | 134 GB | 329 GB | |
Query time | 217 s | - | 49 s | 61 s | |
Query speed | 7.2 MR/m | - | 32.1 MR/m | 25.7 MR/m | |
Query memory | 117 GB | - | 97 GB | 97 GB |