Table 5 Quantification results for the Klyo samples using the reference dataset AFS20 and the average result for AFS31RS90
From: A big data approach to metagenomics for all-food-sequencing
Dataset | Classifier | Cattle | Pig | W.Buf. | Goat | Chicken | Turkey | Σ FP | Σ Dev |
|---|---|---|---|---|---|---|---|---|---|
KLyo_A | Expected | 14.0% | 80.0% | 0.00% | 0.00% | 0.50% | 5.50% | ||
AFS-MC | 16.6% | 71.5% | 0.04% | 0.02% | 0.60% | 4.64% | 0.28% | 12.39% | |
MCSpark | 16.9% | 71.2% | 0.04% | 0.02% | 0.60% | 4.64% | 0.32% | 12.99% | |
CLARK | 16.4% | 70.4% | 0.20% | 0.09% | 0.62% | 4.61% | 0.51% | 13.55% | |
Kraken2 | 15.9% | 70.0% | 0.27% | 0.11% | 0.65% | 4.59% | 0.87% | 13.82% | |
K2+Brack | 17.6% | 70.3% | 0.30% | 0.14% | 0.66% | 4.63% | 0.97% | 15.33% | |
KLyo_B | Expected | 36.0% | 58.0% | 0.00% | 0.00% | 2.00% | 4.00% | ||
AFS-MC | 37.6% | 51.0% | 0.12% | 0.04% | 2.05% | 2.99% | 0.50% | 10.16% | |
MCSpark | 37.9% | 50.5% | 0.12% | 0.04% | 2.06% | 3.02% | 0.60% | 11.11% | |
CLARK | 35.9% | 50.4% | 0.47% | 0.19% | 2.10% | 3.01% | 1.03% | 9.84% | |
Kraken2 | 34.5% | 49.9% | 0.68% | 0.24% | 2.12% | 2.99% | 1.57% | 12.11% | |
K2+Brack | 39.1% | 50.2% | 0.32% | 0.78% | 2.15% | 3.02% | 1.84% | 13.93% | |
KLyo_C | Expected | 58.0% | 36.0% | 0.00% | 0.00% | 4.00% | 2.00% | ||
AFS-MC | 57.7% | 27.1% | 0.16% | 0.06% | 3.56% | 1.16% | 0.95% | 11.47% | |
MCSpark | 57.7% | 26.9% | 0.16% | 0.06% | 3.63% | 1.18% | 0.95% | 11.48% | |
CLARK | 54.1% | 25.9% | 0.69% | 0.29% | 3.58% | 1.16% | 1.88% | 17.11% | |
Kraken2 | 52.2% | 25.7% | 0.95% | 0.36% | 3.57% | 1.17% | 2.58% | 19.94% | |
K2+Brack | 58.6% | 25.8% | 1.07% | 0.46% | 3.60% | 1.18% | 2.89% | 14.90% | |
KLyo_D | Expected | 80.0% | 14.0% | 0.00% | 0.00% | 5.50% | 0.50% | ||
AFS-MC | 74.7% | 10.9% | 0.23% | 0.08% | 4.66% | 0.33% | 0.93% | 10.27% | |
MCSpark | 74.7% | 10.8% | 0.23% | 0.08% | 4.69% | 0.33% | 1.09% | 10.58% | |
CLARK | 70.8% | 10.8% | 0.94% | 0.39% | 4.73% | 0.35% | 1.94% | 15.27% | |
Kraken2 | 68.0% | 10.7% | 1.26% | 0.48% | 4.70% | 0.36% | 2.42% | 18.62% | |
K2+Brack | 77.6% | 10.8% | 1.45% | 0.62% | 4.76% | 0.36% | 2.87% | 9.35% | |
Average | AFS-MC | 0.14% | 0.05% | 0.67% | 11.07% | ||||
MCSpark | 0.14% | 0.05% | 0.74% | 11.54% | |||||
CLARK | 0.58% | 0.24% | 1.34% | 13.94% | |||||
Kraken2 | 0.79% | 0.30% | 1.86% | 16.12% | |||||
K2+Brack | 0.71% | 0.50% | 2.14% | 13.38% | |||||
AFS31RS90 | AFS-MC | 0.58% | 13.97% | ||||||
Average | MCSpark | 0.59% | 14.08% |