Table 1 Comparison to other similar state-of-the-art tools
From: AllEnricher: a comprehensive gene set function enrichment tool for both model and non-model species
Name | Support species | Support Libraries | Library update | Availability | Pipeline embeddable | Customized background list |
|---|---|---|---|---|---|---|
AllEnricher | Model species and non-model species | GO, KEGG, Reactome, DISEASE, and DisGeNET | Customized | Standalone (https://github.com/zd105/AllEnricher) | Yes | Yes |
Enrichr | Human, mouse and rat | GO, KEGG, GEO, InterPro, WikiPathways, MGI, Chromosome Location, Genome Browser PWMs, TargetScan, Reactome, BioCarta, TRANSFAC and JASPAR PWMs, Epigenomics Roadmap, ENCODE, ChEA, PPI databases, NURSA, CORUM, LINCS L1000, DEPOD, HumanCyc, NCI-Nature, Panther, KEA, HPO, GeneSigDB, CMAP, OMIM, VirusMINT, Achilles, dbGaP, Human Gene Atlas, Mouse Gene Atlas, ESCAPE, GTEx, HMDB and HomoloGene | Developer dependent | No | No | |
GO-Elite | Over 60 species | GO, KEGG, GEO, InterPro, WikiPathways, MGI, Disease Ontology, GOSlim, Amadeus Metazoan compendium, PAZAR and AltAnalyze | Developer dependent | Standalone, Web (http://www.genmapp.org/go_elite/) | Yes | No |
clusterProfilers | 19 species | GO and KEGG | Developer dependent | Standalone (https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html) | Yes | No |
FunSet | 11 species | GO | Developer dependent | Standalone, Web(http://funset.uno/) | Yes | Yes |