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Fig. 4 | BMC Bioinformatics

Fig. 4

From: CNV Radar: an improved method for somatic copy number alteration characterization in oncology

Fig. 4

Genome-wide plots of relative read depth and VAF for (a) a hyperdiploidy example (SRR2128547) (b) a sample (SRR2128541) that had risk associated cytogenetic changes (amp1q, del13, and del17p). Top panel of horizontal bars indicates calls by CNV Radar. Red dots indicate 1 + VAF. Black dots indicate relative read depth measured by the log2 ratio of normalized tumor depth vs. normalized reference depth. VAF, variant allele frequency; CNV Radar, copy number variation Rapid aberration detection and reporting, CN-LOH, copy-neutral loss of heterozygosity

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