Table 2 Assortativity coefficient (p values from 100,000 permutations)
From: Compositional zero-inflated network estimation for microbiome data
Level | COZINE | SpiecEasi (MB) | SpiecEasi (GLASSO) | Ising |
|---|---|---|---|---|
Phylum | 0.26 (0.0001) | 0.22 (0.0002) | 0.29 (0.0013) | 0.14 (0.0003) |
Class | 0.22 (< 1e–05) | 0.16 (< 1e–05) | 0.20 (3e–04) | 0.06 (0.0019) |
Order | 0.15 (< 1e–05) | 0.08 (0.0014) | 0.11 (0.0029) | 0.04 (0.0044) |
Family | 0.10 (< 1e–05) | 0.10 (1e–05) | 0.15 (1e–05) | 0.06 (2e–05) |