Graph embeddings on gene ontology annotations for protein–protein interaction prediction

BMC Bioinformatics

Table 4 AUC-ROC values between different methods between using undirected graphs and using directed graphs for spurious PPI prediction

GO	Model	Human	Mouse	Yeast
BP	svm	0.8809	0.8613	0.8654
	mhd	0.8725	0.8439	0.8467
	cos	0.8613	0.8207	0.8324
	d_svm	0.8369	0.8194	0.8207
	d_mhd	0.8203	0.8034	0.8101
	d_cos	0.8167	0.7908	0.7964
CC	svm	0.8415	0.8427	0.8394
	mhd	0.8360	0.8207	0.8254
	cos	0.8191	0.8142	0.8117
	d_svm	0.8127	0.7961	0.7985
	d_mhd	0.8002	0.7834	0.7749
	d_cos	0.7763	0.7771	0.7746
MF	svm	0.8367	0.8416	0.8385
	mhd	0.8209	0.8275	0.8194
	cos	0.8116	0.8134	0.8177
	d_svm	0.7912	0.8027	0.7823
	d_mhd	0.7768	0.7824	0.7658
	d_cos	0.7834	0.7739	0.7549

ISSN: 1471-2105