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Table 1 Overlap between ASMGs and known imprinted genes

From: MethHaplo: combining allele-specific DNA methylation and SNPs for haplotype region identification

Cell line

ASMG

Overlapa

P value

A549

1851

19

< 2.2e−16

HUES64

952

25

< 2.2e−16

GM12878

5919

41

< 2.2e−16

IMR90

2556

30

< 2.2e−16

HepG2

1929

26

< 2.2e−16

K562

1758

15

< 2.2e−16

  1. aThere are 87 known imprinted genes in human genome. For each tested cell line, the second column shows the number of ASMGs and the third column shows the number of overlapped genes between the ASMGs and known imprinted genes
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BMC Bioinformatics

ISSN: 1471-2105

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