Fig. 2
From: MethHaplo: combining allele-specific DNA methylation and SNPs for haplotype region identification
Properties of haplotype regions identified in the A549 cell line. a Total lengths of haplotype blocks from different conditions for haplotype region identification. b Repeat regions covered by haplotype blocks from different conditions for haplotype region identification. c The distribution of haplotype block lengths. For each condition, the haplotype blocks are grouped by (1) block length > 2 kb, (2) 1–2 kb, and (3) 500 bp–1 kb. d The coverage of the haplotype blocks on the genome. Pink is for the haplotype results with SNPs and ASM combined, and blue is for haplotype results with SNPs only. e The percentage of phased SNPs in the haplotype results. The total number of phased SNPs was 866, 434 (percentage of phased variants: 866, 434/1, 616, 824 = 54%) in the condition of haplotype region identification with SNPs only. When SNPs and ASM were combined for haplotype region identification, the total number of phased SNPs was 1, 261, 123 (1, 261, 123 /1, 616, 824 = 78%). f The distribution of phased SNPs on chromosome 3 under two conditions (with or without ASM)