Organism | Genome version | PUF quantification | |||||
---|---|---|---|---|---|---|---|
ProtocolA | Protocol B | Protocol C | Protocol D | Protocol E | Protocol F | ||
Amaranthus hypochondriacus | v1.0 | 873 | 3 | 3 | 4 | 0 | 2 |
Amborella trichopoda | v1.0 | 52 | 0 | 4 | 0 | 0 | 3 |
Ananas comosus | v3 | 1790 | 0 | 7 | 4 | 0 | 3 |
Aquilegia coerulea | v3.1 | 2214 | 10 | 38 | 2 | 0 | 25 |
Arabidopsis halleri | v1.1 | 362 | 0 | 13 | 7 | 0 | 8 |
Arabidopsis lyrata | v2.1 | 609 | 0 | 4 | 4 | 0 | 3 |
Arabidopsis thaliana | TAIR10 | 322 | 0 | 150 | 17 | 0 | 128 |
Boea hygrometrica | GCA_001598015.1 | 37 | 0 | 2 | 0 | 0 | 0 |
Boechera stricta | v1.2 | 557 | 4 | 14 | 18 | 0 | 10 |
Brachypodium distachyon | v3.1 | 2018 | 2 | 73 | 6 | 0 | 49 |
Brachypodium stacei | v1.1 | 1060 | 1 | 41 | 2 | 1 | 33 |
Brassica oleracea capitata | V1.0 | 390 | 0 | 11 | 2 | 0 | 0 |
Brassica rapa | FPsc | 565 | 1 | 21 | 7 | 0 | 13 |
Capsella grandiflora | v1.1 | 202 | 0 | 14 | 9 | 0 | 9 |
Capsella rubella | v1.0 | 2 | 0 | 10 | 0 | 0 | 10 |
Carica papaya | ASGPBv0.4 | 3333 | 0 | 0 | 5 | 0 | 0 |
Citrus clementenina | v1.0 | 7 | 0 | 24 | 0 | 0 | 20 |
Citrus sinensis | v1.1 | 5 | 0 | 27 | 1 | 0 | 23 |
Cucumis sativus | v1.0 | 995 | 0 | 20 | 5 | 0 | 18 |
Daucus carota | v2.0 | 8 | 0 | 0 | 0 | 0 | 0 |
Eucalyptus grandis | v2.0 | 56 | 0 | 23 | 0 | 0 | 21 |
Eutrema salsugineum | v1.0 | 3 | 0 | 8 | 0 | 0 | 8 |
Fragaria vesca | v1.1 | 3142 | 20 | 1 | 2 | 0 | 0 |
Glycine max | Wm82.a2.v1 | 20 | 0 | 103 | 5 | 0 | 98 |
Gossypium raimondii | v2.1 | 18 | 0 | 62 | 0 | 0 | 46 |
Kalanchoe fedtschenkoi | v1.1 | 1933 | 14 | 53 | 5 | 1 | 40 |
Kalanchoe laxiflora | v1.1 | 1576 | 9 | 99 | 7 | 1 | 71 |
Linum usitatissimum | v1.0 | 1542 | 27 | 8 | 7 | 1 | 3 |
Malus domestica | v1.0 | 5025 | 5 | 48 | 7 | 0 | 27 |
Manihot esculenta | v6.1 | 20 | 0 | 40 | 0 | 0 | 35 |
Medicago truncatula | Mt4.0v1 | 229 | 0 | 50 | 0 | 0 | 37 |
Mimulus guttatus | v2.0 | 715 | 2 | 36 | 9 | 0 | 27 |
Musa acuminata | v1 | 3759 | 2 | 2 | 11 | 0 | 0 |
Oropetium thomaeum | v1.0 | 2551 | 8 | 7 | 10 | 1 | 4 |
Oryza sativa | v7_JGI | 709 | 0 | 17 | 82 | 0 | 17 |
Panicum hallii | v2.0 | 22 | 0 | 63 | 2 | 0 | 45 |
Panicum virgatum | v1.1 | 10,211 | 6 | 117 | 31 | 1 | 59 |
Phaseolus vulgaris | v2.1 | 123 | 0 | 36 | 5 | 0 | 35 |
Populus trichocarpa | v3.0 | 1466 | 0 | 124 | 8 | 0 | 94 |
Prunus persica | v2.1 | 16 | 0 | 42 | 2 | 0 | 34 |
Ricinus communis | v0.1 | 18 | 0 | 0 | 1 | 0 | 0 |
Salix purpurea | v1.0 | 1539 | 0 | 0 | 10 | 0 | 0 |
Setaria italica | v2.2 | 1492 | 1 | 59 | 0 | 1 | 38 |
Setaria viridis | v1.1 | 1896 | 1 | 64 | 1 | 1 | 40 |
Solanum lycopersicum | iTAG2.4 | 2694 | 0 | 1 | 1 | 0 | 0 |
Solanum tuberosum | v4.03 | 3353 | 2265 | 3303 | 4 | 4 | 887 |
Sorghum bicolor | v3.1.1 | 14 | 0 | 18 | 0 | 0 | 11 |
Spirodela polyrhiza | v2 | 1104 | 13 | 17 | 11 | 0 | 8 |
Theobroma cacao | v1.1 | 151 | 4 | 1448 | 0 | 0 | 25 |
Trifolium pratense | v2 | 1630 | 6 | 12 | 8 | 0 | 10 |
Vitis vinifera | Genoscope.12X | 123 | 1 | 1 | 0 | 0 | 0 |
Zea mays | 284_AGPv3 | 9674 | 3 | 67 | 1042 | 1 | 60 |
Zostera marina | v2.2 | 41 | 1 | 164 | 0 | 0 | 143 |
Total | 53 | 72,266 | 2409 | 6569 | 1364 | 13 | 2280 |