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Table 4 Predictors of LGG CNV pathway-level (Hallmark) model and fitting results of Cox models

From: Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models

 

Multivariable Cox model

Univariable Cox model

Hazard ratios

se(coef)

p value

Hazard Ratios

se(coef)

p value

HYPOXIA

2.59E−03

1.73

5.79E−04

0.04

1.15

5.24E−03

MYC_TARGETS_V1

507.05

2.16

3.85E−03

858.29

1.27

9.38E−08

CHOLESTEROL_HOMEOSTASIS

13.96

1.08

1.49E−02

3.58

0.73

7.94E−02

PI3K_AKT_MTOR_SIGNALING

25.10

1.37

1.86E−02

2043.83

0.97

4.75E−15

OXIDATIVE_PHOSPHORYLATION

0.02

1.77

2.66E−02

0.03

1.34

7.16E−03

TGF_BETA_SIGNALING

6.40

0.96

5.33E−02

42.35

0.61

7.89E−10

EPITHELIAL_MESENCHYMAL_TRANSITION

11.00

1.79

1.79E−01

29.69

0.92

2.15E−04

IL2_STAT5_SIGNALING

5.36

1.52

2.69E−01

3.74

1.21

2.73E−01

KRAS_SIGNALING_UP

4.08

1.55

3.65E−01

151.12

0.86

5.18E−09

DNA_REPAIR

3.07

1.36

4.10E−01

15.60

1.08

1.12E−02

MYC_TARGETS_V2

0.42

1.19

4.70E−01

0.38

0.77

2.14E−01

ESTROGEN_RESPONSE_LATE

0.34

1.81

5.55E−01

0.01

1.18

1.35E−04

HEME_METABOLISM

0.39

1.80

6.01E−01

0.01

1.47

2.40E−03

HEDGEHOG_SIGNALING

0.75

0.70

6.82E−01

0.08

0.54

2.96E−06

ESTROGEN_RESPONSE_EARLY

1.31

1.96

8.90E−01

1.94E−03

0.90

3.78E−12

NOTCH_SIGNALING

1.04

0.75

9.54E−01

9.07

0.58

1.34E−04