Table 1 Run times (seconds) of the algorithms compared in Fig. 3
From: Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Ploidy | SNP rate | Coverage | SDhaP | Hap++ | Hap10 |
|---|---|---|---|---|---|
Triploid | 0.001 | 2 | 4 | 53 | 419 |
5 | 24 | 54 | 2919 | ||
10 | 34 | 92 | 1590 | ||
0.01 | 2 | 3 | 64 | 2590 | |
5 | 150 | 162 | 8590 | ||
10 | 660 | 400 | 19,221 | ||
Tetraploid | 0.001 | 2 | 8 | 39 | 710 |
5 | 21 | 90 | 4119 | ||
10 | 65 | 204 | 13,824 | ||
0.01 | 2 | 43 | 98 | 15,307 | |
5 | 478 | 370 | 28,598 | ||
10 | 1497 | 1022 | 36,736 |