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Fig. 2 | BMC Bioinformatics

Fig. 2

From: pyMeSHSim: an integrative python package for biomedical named entity recognition, normalization, and comparison of MeSH terms

Fig. 2

OMIM UMLS diseases processing pipeline. MeSH-synonymous UMLS concepts were mapped to MHs or SCRs by pyMeSHSim directly. Meanwhile, non-MeSH-synonymous UMLS concepts were processed as free texts into MeSH-synonymous UMLS concepts, and then mapped to MeSH terms. All gene symbols were mapped to Entrez IDs. SCRs were mapped to its broader MHs. MHs with at least 10 genes in at least two groups were remained for further analysis

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BMC Bioinformatics

ISSN: 1471-2105

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