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Table 4 Performance comparison of deep learning architectures

From: CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins

Architectures

Accuracy

Sensitivity

Specificity

Precision

F-score

MCC

AUC

DeepSig

0.792 (0.011)

0.745 (0.030)

0.838 (0.009)

0.820 (0.016)

0.781 (7.8e-04)

0.586 (0.011)

0.867 (5.8e-07)

DanQ

0.802 (1.4e-05)

0.745 1.8e-05)

0.859 (3.5e-05)

0.839 (3.3e-05)

0.789 (2.2e-05)

0.608 (1.8e-05)

0.886 (6.3e-06)

DeepLoc

0.843 (0.013)

0.755 (0.029)

0.929 (0.037)

0.914 (0.038)

0.827 (0.016)

0.695 (0.013)

0.891 (0.015)

CapsNet-SSP

0.888

(N/A)

0.847

(N/A)

0.929

(N/A)

0.922

(N/A)

0.884

(N/A)

0.779

(N/A)

0.948

(N/A)

  1. The threshold is set where the MCC reaches the maximum value, and the values in brackets are p-values