Table 4 Performance metrics of PVAmpliconFinder
Step | Total sequencing raw reads | TrimGalore | Merging | Dereplication | Chimeric identification | Clustering | MegaBlast | De-novo assembly | BlastN | RaxML | End |
|---|---|---|---|---|---|---|---|---|---|---|---|
Time | + 0′00” | + 0′26” | + 1′13” | + 0′06” | + 0′02” | + 0′16” | + 145′33” | + 0′32” | + 0′29” | + 4′30” | + 0′01” |
Cumulative time | + 0′00” | + 0′26” | + 1′39” | + 1′45” | + 1′47” | + 2′03” | + 147′36” | + 148′08” | + 148′40” | + 149′10” | + 149′11” |