Table 3 Putative new Papillomaviridae-related sequences identified by PVAmpliconFinder
VIRUSname | PV_1 | PV_2 | PV_3 | 37VIRUSput |
|---|---|---|---|---|
%dissimilarity | 16.67 | 18.75 | 20.49 | 0.85 |
Abundance | 0.0025 | 0.0049 | 0.0033 | 3.2918 |
N°reads | 2 | 3 | 2 | 698 |
GInum | gi|1,273,499,301|gb|MF588716.1| | gi|1,273,499,348|gb|MF588722.1| | gi|270,048,224|gb|FJ969896.1| | gi|1,214,938,671|gb|MF356498.1| |
AlignmentPosition_MegaBlast | 3–78 | 1–352 | 207–327 | 1–236 |
VIRUS_closest_MegaBlast | Gammapapillomavirus 12 isolate Gamma12_EV07c367, complete genome | Gammapapillomavirus 13 isolate Gamma13_HIVGc158, complete genome | Human papillomavirus isolate GC04 major capsid protein L1 gene, partial cds | Human papillomavirus isolate ICB1, complete genome |
Pool | pool3-skin-pathogen_S3_L001 | pool5-skin-pathogen_S5_L001 | pool5-skin-pathogen_S5_L001 | pool4-skin-pathogen_S4_L001 |
Tissu | skin | skin | skin | skin |
Primer | FAP | CUT | CUT | FAPM1 |
Length | 160 | 353 | 372 | 262 |
AlignmentPositionBlastN_start:stop (length) | 1–160 (160) | 1–352 (352) | 3–370 (368) | 1–255 (255) |
VIRUS_closest_Blast | HPV-mSK197(92.5%) | HPV-mEV03c45(78.69%) | HPV-mSK014(94.57%) | HPV224(97.25%) |
BlastN_Classification | Gammapapillomavirus | Gammapapillomavirus | Gammapapillomavirus | Gammapapillomavirus |
RaxML_closest_PV | HPV-mSK197 | HPV213 | HPV-mSK014 | HPV224 |
RaxML_Classification | Gammapapillomavirus | Gammapapillomavirus | Gammapapillomavirus | Gammapapillomavirus |
Sequence(s) | TAACAGTGGGCCACCCTTATTTCAGTGTTAAGAATGAAGGCACACAAGCCATAGTAGTTCCAAAGGTTTCAGGAGACCAGTTTAGAGTTTTCAGATTAAGACTCCCAGATCCTAACAAATTTGCTTTAATAGACCCATCTATATATAATCCAGAAAGAGA | GCCGGATCCGAATAAGTTTGCATTGATAGATCAGGACATTTATAATCCAGAAACGGAGAGATTAGTTTGGAGAGTTAAAGGCTTAGAGGTTGACAGAGGTGGTCCTCTAGGTATTGGAGCTGTAGGTCATCCTTTATTAAATAAATATGGAGATACAGAAAATCCTTTGGGAAGACCCATTCCAGAACAAGATGATAATAGAGTTAATTTATCGTTTGAACCAAAACAAACTCAAATTCTTATTGTTGGTTGTGCACCTCCTATAGGACAACATTGGGACGTTACAACACCTTGTAATAAACAGAATGCAGGCGAATGTCCACCTATAGCATTAAATCATACGAAAATACAGG | TGCCGGATCCGAATAAGTTTGCAATTGCAGATACTTGCTTGTATAATCCTGAAAAGGAGCGCTTGGTATGGCAGTTAGTGGGTTTAGAAGTTGACAGAGGTGGTCCTTTAGGAATTGGAGCCACCGGTCACCCATATTTCAATAAATATGTAGATACAGAAAATCCAGTAGCATATCCTCCAAAGCAAGAAGAAGCAGCATTAGATAGCAGGCAAGATATGTCCTTTGACCCTAAACAAGTACAAATGATAATTGTGGGCTGTGCACCTCCAACAGGAGAATATTGGGACACAACTAAATTTTGTGAATCTCATAAAAGTAGCCCAGGAGACTGTCCTGCAATAGAATTAATGCATACTATCATACAGGACG | TAACAGTTGGGCATCCTTATTTCAATAAAATTCAAGACACAGAAAACCCAAATAAATATGTGCCTAAAGCGGGCGATGAAAACAGATTAAATATTAGTGTTGATCCAAAACAGGTACAGCTACTTATTGTGGGCTGTGTGCCTGCAACAGGAGAACATTGGGATATTGCAAGGCCATGTGATGATGAGCAAAATGCTGGTGACTGTCCTCCTATCCAGCTTTTAAATACTGTAATTCAGGATGGCGATATGAGAGATATCGG |