Table 3 Top 20 SNPs reported by the Deep Mixed Model that are associated with Alzheimer’s disease
Rank | SNP | Chr | Chr. Position | Gene | Rank | SNP | Chr | Chr. Position | Gene |
|---|---|---|---|---|---|---|---|---|---|
1 | rs2360982 | 14 | 75764629 | TTLL5 | 11 | rs7310543 | 12 | 69574742 | FRS2 |
2 | rs4238773 | 16 | 53597938 | RPGRIP1L | 12 | rs4889798 | 17 | 75499805 | TMEM94 |
3 | rs2424641 | 20 | 24665866 | SYNDIG1 | 13 | rs7959720 | 12 | 27333098 | ARNTL2 |
4 | rs664866 | 9 | 137077808 | UAP1L1 | 14 | rs7036626 | 9 | 116425812 | ASTN2 |
5 | rs6706169 | 2 | 165989377 | SCN1A | 15 | rs685417 | 13 | 32511131 | N4BP2L2 |
6 | rs7149337 | 14 | 50778766 | NIN | 16 | rs405281 | 7 | 150693280 | GIMAP2 |
7 | rs12881259 | 14 | 90863056 | RPS6KA5 | 17 | rs10876394 | 12 | 51686444 | SCN8A |
8 | rs12329001 | 2 | 65270990 | ACTR2 | 18 | rs7639223 | 3 | 40260163 | MYRIP |
9 | rs13242458 | 7 | 99533066 | ZKSCAN5 | 19 | rs12488539 | 3 | 57561864 | PDE12 |
10 | rs13063312 | 3 | 48636988 | CELSR3 | 20 | rs10402233 | 19 | 40472690 | SPTBN4 |