Table 1 Alignment performance comparison on the TM-align dataset
From: MADOKA: an ultra-fast approach for large-scale protein structure similarity searching
Method | RMSD | TM-score | Running Time (s) |
|---|---|---|---|
CE | 6.30 | 0.273 | 0.52 |
SAL | 6.96 | 0.320 | 2.47 |
TM-align | 4.99 | 0.348 | 0.13 |
Fr-TM-align | 4.73 | 0.365 | 1.65 |
MADOKA | 4.07 | 0.562 | 0.02 |