Table 2 Proportion of predicted peptides by PEPOP and by the random method having a Se and a PPV above the threshold, without taking into account aa positions (WTK) and by taking into account aa positions (TK)
From: Benchmarking the PEPOP methods for mimicking discontinuous epitopes
Se and PPV threshold | Proportion of predicted peptides by | |||
|---|---|---|---|---|
PEPOP (WTK) | random (WTK) | PEPOP (TK) | random (TK) | |
0.5 | 21,47 | 15,69 | 2,1 | 0 |
0.6 | 7,55 | 3,57 | 0,77 | 0 |
0.7 | 1,72 | 0,28 | 0,18 | 0 |
0.8 | 0,14 | 0 | 0 | 0 |