Measuring rank robustness in scored protein interaction networks

BMC Bioinformatics

Table 1 Summary statistics for the six analysed networks

Name	Network	Number of nodes	Number of edges	Edge density
PVX	P. vivax, STRING	3255	344691	∼ 0.065
ECOLI	E. coli, STRING	4144	583440	∼ 0.068
YEAST	S. cerevisiae, STRING	6418	939998	∼ 0.046
HPRED	S. cerevisiae, HitPredict	5673	113001	∼ 0.007
SYN-GNP	Synthetic, Bernoulli	500	7459	∼ 0.060
SYN-PVX	Synthetic, randomised P. vivax	1000	30516	∼ 0.061

The left-most column corresponds to the names the networks are referred as later in the text. The number of edges and edge density refer to the all scored edges before any threshold is applied to the network

ISSN: 1471-2105