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Table 3 Simulated drug profiles

From: Influence of batch effect correction methods on drug induced differential gene expression profiles

Drug

Drug samples

Control samples

Total sample size

DEG in unsimulated data

monastrol

8

8

16

22

LY-294002

12

12

24

403

colchicine

6

25

31

21

alprostadil

7

26

33

18

nocodazole

5

29

34

1060

felodipine

7

36

43

72

vorinostat

12

71

83

5145

fulvestrant

40

88

128

1453

trichostatin A

128

709

837

6481

  1. Note: drug, the drug of which the simulated data were generated from. DEG, differentially expressed genes, that is, the number of genes that were simulated to be differentially expressed due to the drug effects