Type | Attributes | Details |
---|---|---|
Genome | taxid | Taxonomy ID of each species |
refseq | Refseq ID of the GFF file | |
Sequence | List of sequence reads in each GFF file [26]. | |
AssemblerRoot | List of assembly programs associated with this genome | |
accession | Accession number | |
Sequence | header | Header of Sequence |
FeatureRoot | List of features including exon,gene,mRNA, and CDS associated with this sequence | |
seq | Actual DNA sequences from FASTA files | |
FeatureRoot | refseq | This field shows the key ID |
feature | This field is the list of features associated with this ID | |
Feature | accession | Accession code of the Sequence |
seqid | Sequence ID | |
source | A text qualifier that describes the algorithm or procedure that generated this feature. | |
ftype | Type of the feature | |
start | starting point of the feature | |
end | End point of the feature | |
score | Score of the feature. This is a floating point number. | |
strand | + and - for positive and negative strand respectively | |
phase | Phase of the feature. The phase is one of the integers 0, 1, or 2 | |
Attribute | List of attributes for each feature | |
parent | Shows the parent of the attribute | |
Attribute | id | Attribute ID |
tag | Attribute tag including gbkey etc. | |
value | Value of the tag | |
AssemblerRoot | Assembler | List of assembly programs |
total-length | Total length or genome size (base pair) | |
total-gap-length | Total gap length after genome assembly | |
scaffold-N50 | Scaffold N50 metric | |
scaffold-count | Scaffold count metric | |
contig-N50 | Contig N50 metric | |
contig-count | Contig count metric | |
Assembler | name | Assembly program used to assemble the genome |
desc | Program attributes: program name, program version, etc. |