Features | Calculation | Description |
---|---|---|
RVbfe | \( \frac{\left|{V}_{bfe}-{V}_{bmfe}\right|}{\left|{V}_{bmfe}\right|} \) | Pseudoknotted RNA base substructure normalized free energy |
RVkfe | \( \frac{\left|{V}_{bfe}-{V}_{kfe}\right|}{\left|{V}_{bfe}\right|} \) | Pseudoknotted RNA knotted substructure normalized free energy |
Perkbp | \( \frac{\# of\ knot\ base\ pairs}{\# of\ total\ base\ pairs} \) | Percentage of knot base pairs |