From: FastProNGS: fast preprocessing of next-generation sequencing reads
Tools | run-timec | rss (MB)d | vmem (MB)e | Average CPU utilization f | rchar(GB)g | wchar(GB)h | run-time/CPUi | Process .gzj |
---|---|---|---|---|---|---|---|---|
NGS QC Toolkit | 344 | 3062 | 3400 | 3.312 | 88 | 54 | 1139 | R + W |
FASTX-Toolkit | 308 | 10 | 29 | 1.556 | 60 | 46 | 479 | W |
PRINSEQ | 252 | 20 | 115 | 1.173 | 177 | 99 | 296 | – |
Fastqc | 7 | 395 | 2150 | 2.403 | 6 | 0 | 17 | R |
Cutadapta | 4 | 670 | 1645 | 6.548 | 56 | 75 | 26 | R |
Cutadaptb | 58 | 675 | 1659 | 1.605 | 84 | 84 | 93 | R + W |
FastProNGSb | 3 | 7168 | 7291 | 6.396 | 6 | 22 | 19 | R + W |
FastProNGSa | 13 | 7066 | 7270 | 6.008 | 6 | 4 | 78 | R |
FaQC | 27 | 121 | 644 | 3.876 | 7 | 27 | 105 | R |
fastpa | 8 | 723 | 1167 | 4.614 | 7 | 5 | 36 | R + W |
fastpb | 7 | 720 | 1110 | 5.421 | 7 | 21 | 40 | R |