From: FastProNGS: fast preprocessing of next-generation sequencing reads
Software | Major functions | Programming language |
---|---|---|
FastQC | Quality check | Java |
PIQA | Quality check | R,C++ |
FASTX-Toolkit | A collection of tools to filter low quality reads and remove adapters | C,C++ |
Fqtools | FASTQ file manipulation, such as validate FASTQ and trim reads in a FASTQ file | C |
seqtk | Toolkit for processing sequences in FASTA/Q formats, such as format conversion and subsampling of sequences | C |
PRINSEQ | Filter, reformat and trim sequences | Perl, R |
Multiqc | Aggregate results across many samples into a single report | Python |
NGS QC Toolkit | Filter low quality reads and remove adapters. | Perl |
Fastp | Filter low quality reads and trim adapters | C++ |
FaQCs | Filter low quality reads and trim adapters | C++ |