Skip to main content

Table 3 Settings for the chosen taxonomic assignment methods

From: Taxonomy based performance metrics for evaluating taxonomic assignment methods

Method

Word length

Other parameters

Implemented by

KNN

8

 

Mothur v.1.39.5

1NN

8

numwanted = 1

Mothur v.1.39.5

SINTAX

8

cutoff = 0

USEARCH v9.2

RDPNBC

8

cutoff = 0

Mothur v.1.39.5