From: Pairwise alignment of nucleotide sequences using maximal exact matches
M i | M j | \({LT}_{i}^{j}\) | \({LQ}_{i}^{j}\) | \({LT}_{i}^{j}-{LD}_{i}^{j}\) | Gaps | Mismatches |
---|---|---|---|---|---|---|
M 1 | M 2 | 0 | 2 | -2 | 2 insertion | 0 |
M 2 | M 3 | 3 | 2 | 1 | 1 deletion | 2 |
M 3 | M 4 | 2 | 2 | 0 | 0 | 2 |
M 4 | M 5 | 2 | 0 | 2 | 2 deletion | 0 |
M 5 | M 6 | 2 | 3 | -1 | 1 insertion | 2 |