Skip to main content
Fig. 1 | BMC Bioinformatics

Fig. 1

From: FastqPuri: high-performance preprocessing of RNA-seq data

Fig. 1

Workflow for preprocessing fastq files with FastqPuri. Qreport generates a quality report in html format for each sample, while Sreport generates one summary quality report for all samples. Depending on the size of the sequence file with potential contaminations, makeTree or makeBloom generates a data structure for filtering contaminations. trimFilter (or trimFilterPE for paired-end data) filters and trims reads containing adapters or adapter remnants, biological contaminations and low quality bases. On the filtered reads, Qreport and Sreport can be run again to ensure that the filtered data meets the user’s expectations. Legend: yellow: fastq files, red: FastqPuri executables, green: FastqPuri quality reports in html format

Back to article page