From: DNAscan: personal computer compatible NGS analysis, annotation and visualisation
Stage | DNAscan mode | ||
---|---|---|---|
 | Fast | Normal | Intensive |
Alignment | HISAT2 | HISAT2 + BWA mem | HISAT2 + BWA mem |
SNVs calling | Freebayes | Freebayes | Freebayes |
Small indels calling | Freebayes | Freebayes | GATK HC |