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Table 1 Key tools used by DNAscan in the three modes

From: DNAscan: personal computer compatible NGS analysis, annotation and visualisation

Stage

DNAscan mode

 

Fast

Normal

Intensive

Alignment

HISAT2

HISAT2 + BWA mem

HISAT2 + BWA mem

SNVs calling

Freebayes

Freebayes

Freebayes

Small indels calling

Freebayes

Freebayes

GATK HC