Table 1 Data production
From: A new massively parallel nanoball sequencing platform for whole exome research
Hiseq-1 | Hiseq-2 | Hiseq-3 | Hiseq-4 | BGISEQ-1 | BGISEQ-2 | BGISEQ-3 | BGISEQ-4 | |
|---|---|---|---|---|---|---|---|---|
Read length | PE150a | PE150 | PE150 | PE150 | PE100 | PE100 | PE100 | PE100 |
Raw data/Gb | 10.04 | 9.83 | 9.78 | 9.00 | 7.81 | 7.90 | 7.65 | 7.56 |
Mean depth | 99.77 | 99.78 | 100.37 | 99.66 | 102.27 | 101.88 | 101.92 | 101.77 |
Bases on targetb (%) | 56.02 | 56.84 | 58.79 | 62.43 | 71.54 | 70.22 | 72.65 | 73.20 |
Reads on target (%) | 70.85 | 71.32 | 71.70 | 70.31 | 83.36 | 82.14 | 83.18 | 84.15 |
Duplication rate | 7.12 | 6.59 | 8.79 | 7.92 | 7.10 | 7.00 | 7.18 | 6.75 |
Coverage (%) | 99.74 | 99.66 | 99.72 | 99.75 | 99.82 | 99.83 | 99.82 | 99.82 |
4x coverage (%) | 99.51 | 99.37 | 99.43 | 99.49 | 99.63 | 99.64 | 99.62 | 99.61 |
10x coverage (%) | 98.89 | 98.67 | 98.60 | 98.74 | 98.89 | 98.93 | 98.85 | 98.84 |
20x coverage (%) | 97.10 | 96.80 | 96.11 | 96.16 | 96.29 | 96.30 | 96.01 | 96.18 |