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Fig. 8 | BMC Bioinformatics

Fig. 8

From: ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark

Fig. 8

Comparison of execution time and speedup on 6 nodes. The figure shows the comparison of execution time and speedup with different threads on a 6-node cluster among three tools: GATK4.0 HaplotypeCallerSpark, SparkGA and ADS-HCSpark. T (GATK4 HaplotypeCallerSpark), T (SparkGA), T (ADS-HCSpark) represent the execution time of GATK4.0 HaplotypeCallerSpark, SparkGA and ADS-HCSpark. S (GATK4 HaplotypeCallerSpark), S (SparkGA), S (ADS-HCSpark) represent the speedup of GATK4.0 HaplotypeCallerSpark, SparkGA and ADS-HCSpark

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BMC Bioinformatics

ISSN: 1471-2105

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