Table 1 LPv and F-measure values for the top 500 Sirt3 correlated genes using different Sirt3 probes and datasets
From: Evaluation of Sirtuin-3 probe quality and co-expressed genes using literature cohesion
Dataset | Probe ID | Probe target | GS1 F-measure | GS2 F-measure | LPv |
|---|---|---|---|---|---|
DS1: SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA : 10568997 | |||||
| Â | 10569001 | Exon | 0.027 | 0.037 | 1.85E-07 |
| Â | 10568998 | Exon | 0.067 | 0.074 | 9.81E-07 |
| Â | 10569000 | Exon | 0.078 | 0.077 | 1.36E-06 |
| Â | 10568999 | Exon | 0.048 | 0.046 | 2.12E-04 |
| Â | 10569002 | Exon | 0.008 | 0.009 | 6.02E-04 |
| Â | 10569007 | Exon | 0.003 | 0.006 | 1.66E-01 |
| Â | 10569006 | Exon | 0.011 | 0.003 | 2.12E-01 |
| Â | 10569005 | Exon | 0.045 | 0.040 | 2.95E-01 |
| Â | 10569003 | Exon | 0.005 | 0.003 | 3.59E-01 |
| Â | 10569004 | Exon | 0.003 | 0.006 | 8.30E-01 |
DS2: EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level | |||||
| Â | 10569001 | Exon | 0.016 | 0.014 | 3.24E-03 |
| Â | 10569003 | Exon | 0.013 | 0.020 | 7.77E-03 |
| Â | 10568998 | Exon | 0.029 | 0.017 | 2.54E-02 |
| Â | 10568999 | Exon | 0.037 | 0.034 | 2.54E-02 |
| Â | 10569000 | Exon | 0.029 | 0.020 | 4.33E-02 |
| Â | 10569005 | Exon | 0.003 | 0.003 | 9.58E-02 |
| Â | 10569002 | Exon | 0.016 | 0.006 | 1.11E-01 |
| Â | 10569007 | Exon | 0.005 | 0.009 | 1.66E-01 |
| Â | 10569004 | Exon | 0.019 | 0.020 | 1.88E-01 |
| Â | 10569006 | Exon | 0.003 | 0.003 | 2.66E-01 |
DS3: UMUTAffy Hippocampus Exon (Feb09) RMA Database | |||||
| Â | 5499567 | Exon | - | 0.057 | 2.17E-25 |
| Â | 4907923 | Exon | - | 0.051 | 3.00E-22 |
| Â | 4495913 | Exon | - | 0.045 | 1.15E-19 |
| Â | 5121237 | Exon | - | 0.063 | 1.15E-19 |
| Â | 4643366 | Exon | - | 0.048 | 2.05E-18 |
| Â | 5406945 | Exon | - | 0.051 | 1.09E-13 |
| Â | 4731401 | Exon | - | 0.048 | 2.09E-12 |
| Â | 5102588 | Exon | - | 0.045 | 2.27E-08 |
| Â | 4328784 | Intron | - | 0.042 | 1.36E-06 |
| Â | 5237727 | Exon | - | 0.021 | 3.54E-06 |
| Â | 4651363 | Intron | - | 0.012 | 1.62E-04 |
| Â | 5463214 | Exon | - | 0.012 | 6.02E-04 |
| Â | 4593342 | Exon | - | 0.006 | 7.74E-04 |
| Â | 5216427 | Intron | - | 0.006 | 4.06E-03 |
| Â | 4320391 | Intron | - | 0.006 | 1.74E-02 |
| Â | 4704662 | Intron | - | 0.009 | 1.74E-02 |
| Â | 5290133 | Intron | - | 0.000 | 2.54E-02 |
| Â | 5287872 | Intron | - | 0.000 | 1.11E-01 |
| Â | 5321074 | Exon | - | 0.003 | 1.66E-01 |
| Â | 5240866 | Intron | - | 0.003 | 2.12E-01 |
| Â | 5553357 | Exon | - | 0.021 | 2.66E-01 |
| Â | 5433908 | Intron | - | 0.000 | 3.26E-01 |
| Â | 4519614 | Intron | - | 0.012 | 6.10E-01 |
| Â | 4489481 | Intron | - | 0.003 | 7.13E-01 |
| Â | 4798276 | Intron | - | 0.000 | 7.13E-01 |
| Â | 4601230 | Exon | - | 0.012 | 8.30E-01 |