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Table 4 Number of the detected DE genes and false positive rates of the eleven tools using negative control real data for an adjusted p-value or FDR of 0.05

From: Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data

 

Number of detected DE genes

False positive rate (FP/FP + TN)

Monocle2

917

0.126

EMDomics

733

0.101

DESeq2

19

0.003

D3E

160

0.022

scDD

5

0.0007

MAST

0

0

edgeR

0

0

SCDE

0

0

SINCERA

0

0

DEsingle

4

0.0005

SigEMD

50

0.007