MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data

BMC Bioinformatics

Table 2 Spearman correlation coefficients (SCC) between the inferred bin methylation level from different methods and the RRBS data. Cell line: GM12878, bin size: 100 bp

	chr1	chr2	chr11	chr12	chr21	chr22
MEDIPS	0.7419	0.7599	0.7621	0.7566	0.8556	0.8127
MeDEStrand (only positive strand)	0.7837	0.7814	0.7933	0.7913	0.8679	0.824
MeDEStrand (only negative strand)	0.7827	0.7836	0.7939	0.7959	0.8667	0.8271
MeDEStrand	0.7858	0.7853	0.7943	0.7945	0.8719	0.8277

ISSN: 1471-2105