From: Rapid analysis of metagenomic data using signature-based clustering
Wound Microbiome | ||||||
46313157 sequences, average sequence length: 337 | ||||||
Method | Time | Clusters | Intercluster | Â | Intracluster | Â |
 | (m) |  | Avg | SD | Avg | SD |
SigClust | 16 | 5254 | 59.0 | 58.7 | 234.4 | 97.9 |
Merged SigClust | 18 | 1260 | 55.5 | 51.2 | 211.6 | 104.9 |
UClust T=0.75 | 156 | 7141 | 50.3 | 41.8 | 202.9 | 95.0 |
16S Genus | 2586 | 2221 | 43.9 | 28.0 | 188.9 | 92.5 |
16S Species | 2586 | 8375 | 48.7 | 39.6 | 205.8 | 93.6 |
16S Strains | 2586 | 9354 | 50.1 | 42.6 | 206.7 | 93.5 |
Oral Metagenome – Human (mgp41)[11] | ||||||
1237319 sequences, average sequence length: 59 | ||||||
Method | Time | Clusters | Intercluster | Â | Intracluster | Â |
 | (m) |  | Avg | SD | Avg | SD |
SigClust | 0.2 | 17621 | 25.5 | 11.8 | 53.7 | 9.6 |
UClust T=0.75 | 1.7 | 17621 | 20.2 | 6.9 | 43.4 | 9.1 |
PRJEB4688 [12] | ||||||
5497442 sequences, average sequence length: 253 | ||||||
Method | Time | Clusters | Intercluster | Â | Intracluster | Â |
 | (m) |  | Avg | SD | Avg | SD |
SigClust | 1.62 | 6998 | 44.4 | 48.5 | 257.7 | 67.0 |
UClust T=0.75 | 9 | 6998 | 37.1 | 38.0 | 159.1 | 66.9 |