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Table 2 The main features of the interaction databases for constructing gene regulatory network

From: miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase

Database

Interaction

miRNA

mRNA,TF

  

Version

Name

Accession

Symbols

Entrez ID

miRTarbase v7

miRNA →mRNA,TF

v21

\(\checkmark \)

×

\(\checkmark \)

\(\checkmark \)

miRecords v4

 

v16

\(\checkmark \)

×

\(\checkmark \)

×

TransmiR v1.2

TF →miRNA

v17

\(\checkmark \)

×

\(\checkmark \)

\(\checkmark \)

ENCODE network [29]

 

v17

\(\checkmark \)

×

\(\checkmark \)

×

TRED

TF →mRNA,TF

-

-

-

×

\(\checkmark \)

ENCODE Chip-seq

 

-

-

-

×

\(\checkmark \)

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BMC Bioinformatics

ISSN: 1471-2105

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