BMC Bioinformatics

Table 1 Sequences of synthetic cyclic peptides. Circularization was achieved by making a disulfide bond between N-terminal and C-terminal cysteine residues. These peptides are available in the SMILES format listed in Additional file 1: Table S1

From: Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques

Peptides	Sequences									Exp. PPB (f_b^*)
Pep.1	Cys	Tyr	Phe	Gln	Asn	Pro	Arg	Gly	Cys	0.242
Pep.2	Cys	Tyr	Ile	Gln	Asn	Pro	Leu	Gly	Cys	0.005
Pep.3	Cys	Ala	Trp	Lys	Val	Thr	Cys			0.00040
Pep.4	Cys	Phe	Pro	Phe	Trp	Lys	Tyr	Cys		0.616
Pep.5	Cys	Trp	Arg	Pro	Arg	Val	Ala	Arg	Cys	0
Pep.6	Cys	Phe	Phe	Trp	Lys	Thr	Thr	Cys		0.263
Pep.7	Cys	Lys	Leu	Leu	Lys	Lys	Thr	Cys		0
Pep.8	Cys	Tyr	Tyr	Tyr	Tyr	Tyr	Tyr	Tyr	Cys	0.855
Pep.9	Cys	Ala	Gly	Leu	Val	Leu	Ala	Ala	Cys	0
Pep.10	Cys	Trp	Val	His	Pro	Gln	Phe	Glu	Cys	0.367
Pep.11	Cys	Asn	Gln	Pro	Trp	Gln	Cys			0
Pep.12	Cys	Ser	Phe	Asp	Asp	Trp	Leu	Ala	Cys	0.800
Pep.13	Cys	Tyr	Leu	Ala	Glu	Tyr	His	Gly	Cys	0.349
Pep.14	Cys	Ala	Pro	Ala	Trp	Ala	His	Gly	Cys	0.074
Pep.15	Cys	Phe	Val	Tyr	Ser	Ala	Val	Cys		0.153
Pep.16	Cys	Arg	Ile	Lys	Arg	Tyr	Cys			0.151

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com