Table 6 The degree distribution of proteins of different sizes of submatrix Wp×p (k=3) on S. cerevisiae, H. sapiens, and M. musculus
From: Predicting protein-protein interactions using high-quality non-interacting pairs
| Â | Â | r | Maximum degree | Number | The proportion of proteins/the number of interactions (non-interactions) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | 1<degree<10 | 10<degree<20 | 20<degree<30 | 30<degree<50 | 50<degree<70 | 70<degree<80 | 80<degree<100 | 100<degree<150 | degree>150 |
S. cerevisiae | Positive | 6.8763 | 252 | 4382 | 0.7976/0.3418 | 0.1130/0.2131 | 0.0436/0.1372 | 0.0299/0.1429 | 0.0087/0.0667 | 0.0014/0.0132 | 0.0030/0.0341 | 0.0025/0.0382 | 0.0005/0.0128 |
| Â | p=500 | 35.6391 | 99 | 942 | 0.0106/0.0022 | 0.0998/0.0447 | 0.1943/0.1396 | 0.6008/0.6468 | 0.0669/0.1024 | 0.0096/0.0200 | 0.0180/0.0443 | 0/0 | 0/0 |
| Â | p=1000 | 18.4008 | 56 | 1779 | 0.1417/0.0560 | 0.4817/0.3978 | 0.2816/0.3518 | 0.0877/0.1744 | 0.0073/0.0200 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=1500 | 12.9057 | 48 | 2482 | 0.3429/0.1847 | 0.5028/0.5189 | 0.1241/0.2219 | 0.0302/0.0745 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=2000 | 10.2938 | 36 | 3056 | 0.5301/0.3250 | 0.3750/0.4727 | 0.0906/0.1900 | 0.0043/0.0123 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=2500 | 8.7113 | 29 | 3554 | 0.6294/0.4206 | 0.3348/0.4952 | 0.0357/0.0841 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=3000 | 7.8181 | 28 | 3914 | 0.6704/0.4607 | 0.3143/0.5003 | 0.0153/0.0390 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=3500 | 7.2907 | 24 | 4163 | 0.7173/0.5390 | 0.2782/0.4491 | 0.0046/0.0119 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=4000 | 6.9820 | 24 | 4324 | 0.7590/0.6048 | 0.2396/0.3913 | 0.0014/0.0038 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=4382 | 6.9070 | 24 | 4365 | 0.7830/0.6512 | 0.2160/0.3463 | 0.0009/0.0025 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
H. sapiens | Positive | 1.8146 | 31 | 2384 | 0.9727/0.8470 | 0.0243/0.1262 | 0.0025/0.0219 | 0.0004/0.0049 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=100 | 33.4103 | 73 | 195 | 0/0 | 0.0051/0.0030 | 0.2410/0.1938 | 0.7282/0.7548 | 0.0205/0.0376 | 0.0051/0.0109 | 0/0 | 0/0 | 0/0 |
| Â | p=300 | 10.7926 | 28 | 569 | 0.4095/0.2923 | 0.5536/0.6335 | 0.0369/0.0742 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=500 | 6.4638 | 25 | 899 | 0.8365/0.7101 | 0.1613/0.2829 | 0.0022/0.0070 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=700 | 4.6913 | 18 | 1179 | 0.9245/0.8328 | 0.0755/0.1672 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=1000 | 3.3799 | 18 | 1532 | 0.9778/0.9371 | 0.0222/0.0629 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=1300 | 2.7423 | 14 | 1793 | 0.9933/0.9791 | 0.0067/0.0209 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=1500 | 2.4481 | 13 | 1946 | 0.9964/0.9881 | 0.0036/0.0119 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=1700 | 2.2924 | 11 | 2038 | 0.9995/0.9984 | 0.0005/0.0016 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=2000 | 2.1370 | 10 | 2139 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=2384 | 2.0171 | 10 | 2224 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
M. musculus | Positive | 0.9473 | 24 | 948 | 0.9926/0.9450 | 0.0063/0.0411 | 0.0011/0.0139 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=100 | 8.6649 | 22 | 191 | 0.6545/0.5287 | 0.3351/0.4480 | 0.0105/0.0233 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=300 | 2.6700 | 13 | 503 | 0.9841/0.9474 | 0.0159/0.0526 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=500 | 1.7843 | 10 | 663 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=700 | 1.4745 | 10 | 746 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
| Â | p=948 | 1.2214 | 7 | 831 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |