Table 1 Hyperparameter settings used for CVAE training
Hyperparameter | Lower bound | Upper bound | Optimal Fs-Peptide | Optimal BBA | Optimal VHP |
|---|---|---|---|---|---|
Num convolutional layers | 1 | 4 | 4 | 4 | 4 |
Num convolutional filters | 16 | 125 | 100 | 100 | 99 |
Convolutional filter shape (m×m) | 2 | 7 | 5 | 5 | 5 |
Num dense neurons | 32 | 100 | 64 | 64 | 58 |
Latent dimension | 2 | 16 | 10 | 10 | 9 |
Mean reconstruction error | 7.82 | 24.31 | 74.66 | ||
Mean reconstruction error (latent dim 3) | 23.24 | 53.48 | 113.07 |