Skip to main content
Fig. 1 | BMC Bioinformatics

Fig. 1

From: A new sequence logo plot to highlight enrichment and depletion

Fig. 1

Illustration of the differences between standard logo, EDLogo and wKL-Logo representations. The figure shows how the different logos represent observed frequencies p=(pA,pC,pG,pT)=(0.33,0.33,0.33,0.01) (compared with a uniform background, q=(0.25,0.25,0.25,0.25)). The standard logo effectively represents p by highlighting that “A, C and G are enriched”; EDLogo represents it by highlighting “T is depleted”; wKL-Logo represents it as “A, C and G are enriched and T is depleted”. All are correct statements, but the EDLogo representation is the most parsimonious

Back to article page