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Table 5 TF motifs enriched in gene promoters (300 bp) of up- or down-regulated genes

From: iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

List

Motif

TF

TF family

FDR

Down

Regulated

GGCGGGAA

E2F4

E2F

3.40E-14

GGCCGGAG

MBD2

MBD

7.70E-14

CACGTG

TCFL5

bHLH

2.30E-11

GGGGGCGGGGC

SP2

C2H2 ZF

3.40E-11

GGGCGGGAA

E2F6

E2F

8.60E-10

GTGGGCGTGGC

SP6

C2H2 ZF

2.10E-09

TGCGGG

ZBTB1

C2H2 ZF

2.20E-08

GGGCGTG

KLF7

C2H2 ZF

2.90E-08

ATGCGTGGGCGG

EGR4

C2H2 ZF

1.50E-07

CACAGCGGGGGGTC

ZIC4

C2H2 ZF

1.80E-07

Up

Regulated

GGGGGCGGGGC

SP2

C2H2 ZF

2.20E-06

GGGGGGGGGCC

PATZ1

C2H2 ZF

2.40E-06

TGCGGG

ZBTB1

C2H2 ZF

2.60E-06

GGGGGGT

ZIC5

C2H2 ZF

1.40E-04

GGCCGGAG

MBD2

MBD

1.50E-04

CACGTG

TCFL5

bHLH

1.50E-04

CACAGCGGGGGGTC

ZIC4

C2H2 ZF

1.10E-03

GGGGCCCAAGGGGG

PLAG1

C2H2 ZF

1.10E-03

GTGGGCGTGG

SP8

C2H2 ZF

1.40E-03

GTGGGCGTGGC

SP6

C2H2 ZF

2.30E-03