From: Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Haploid Assemblies (Primary contigs) | Haplotigs | Artefacts | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
FALCON Unzip | Purge Haplotigs | Redundans | FALCON Unzip | Purge Haplotigs | Purge Haplotigs | |||||||
# | % | # | % | # | % | # | % | # | % | # | % | |
Total BUSCOs | 1440 | 100.0 | 1440 | 100.0 | 1440 | 100.0 | 1440 | 100.0 | 1440 | 100.0 | 1440 | 100.0 |
Complete BUSCOs | 1413 | 98.1 | 1407 | 97.7 | 1407 | 97.7 | 1342 | 93.2 | 1400 | 97.2 | 17 | 1.2 |
- single-copy | 1324 | 91.9 | 1377 | 95.6 | 1378 | 95.7 | 1313 | 91.2 | 1372 | 95.3 | 17 | 1.2 |
- duplicated | 89 | 6.2 | 30 | 2.1 | 29 | 2.0 | 29 | 2.0 | 28 | 1.9 | 0 | 0.0 |
Fragmented BUSCOs | 5 | 0.3 | 8 | 0.6 | 8 | 0.6 | 5 | 0.3 | 5 | 0.3 | 3 | 0.2 |
Missing BUSCOs | 22 | 1.5 | 25 | 1.7 | 25 | 1.7 | 93 | 6.5 | 35 | 2.4 | 1420 | 98.6 |