Table 3 Assembly statistics for draft FALCON Unzip, Redundans-processed and Purge Haplotigs-processed A. thaliana assemblies
From: Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Haploid Assemblies (Primary contigs) | Haplotigs | Artefacts | ||||
|---|---|---|---|---|---|---|
FALCON Unzip | Purge Haplotigs | Redundans | FALCON Unzip | Purge Haplotigs | Purge Haplotigs | |
Contigs | 172 | 120 | 93 | 248 | 200 | 100 |
Contigs > = 1000 bp | 171 | 119 | 92 | 248 | 200 | 100 |
Contigs > = 10,000 bp | 171 | 108 | 92 | 214 | 200 | 77 |
Total length (Mbp) | 140.0 | 125.6 | 119.2 | 104.9 | 117.7 | 1.740 |
GC (%) | 36.7 | 36.7 | 36.6 | 36.1 | 36.1 | 38.5 |
N50 (Mbp) | 7.96 | 7.98 | 7.98 | 6.92 | 4.63 | 0.0199 |